Package: phylosamp
Type: Package
Title: Sample Size Calculations for Molecular and Phylogenetic Studies
Version: 1.0.1
Date: 2023-04-25
Authors@R: c(person("Shirlee", "Wohl", role=c("aut", "ctb"), email="swohl@scripps.edu"),
              person("Elizabeth C", "Lee", role=c("aut", "ctb"), email="elizabeth.c.lee@jhu.edu"),
              person("Lucy", "D'Agostino McGowan", role=c("aut", "ctb"), email = "lucydagostino@gmail.com", 
              comment = c(ORCID = "0000-0002-6983-2759")),
              person("John R", "Giles", role=c("aut", "ctb"), email="jrgiles@uw.edu"),
              person("Justin", "Lessler", role=c("aut", "cre"), email="jlessler@unc.edu"))
Maintainer: Justin Lessler <jlessler@unc.edu>
Description: Implements novel tools for estimating sample sizes needed
        for phylogenetic studies, including studies focused on
        estimating the probability of true pathogen transmission
        between two cases given phylogenetic linkage and studies
        focused on tracking pathogen variants at a population level.
        Methods described in Wohl, Giles, and Lessler (2021) and in
        Wohl, Lee, DiPrete, and Lessler (2023).
License: GPL-2
URL: https://github.com/HopkinsIDD/phylosamp
BugReports: https://github.com/HopkinsIDD/phylosamp/issues
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.2.3
Depends: R (>= 2.10), stats
Imports: cli, lifecycle, rlang
Suggests: cowplot, ggplot2, knitr, purrr, RColorBrewer, reshape2,
        rmarkdown, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Repository: https://hopkinsidd.r-universe.dev
Date/Publication: 2023-05-23 22:02:12 UTC
RemoteUrl: https://github.com/hopkinsidd/phylosamp
RemoteRef: HEAD
RemoteSha: d43c73bfa108ed03cb5e6330518fd5b3fc1d74c2
NeedsCompilation: no
Packaged: 2026-06-23 07:51:14 UTC; root
Author: Shirlee Wohl [aut, ctb],
  Elizabeth C Lee [aut, ctb],
  Lucy D'Agostino McGowan [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-6983-2759>),
  John R Giles [aut, ctb],
  Justin Lessler [aut, cre]